Business Taxes and more

How to File Your S Corporation Income Tax Return in California

Filing your S Corporation Income Tax Return in California doesn’t have to be a headache. If your business is set up as an S Corp in California – even if it’s a small or new one -you need to file Form 100S with the Franchise Tax Board. You’ll pay a 1.5% tax on net income or at least the $800 minimum franchise tax each year.

In this post, we’ll walk you through the whole process – & what forms to use. There is no confusion – just easy, step-by-step tips so you can file your return with confidence. Let’s make it simple & stress‑free.

What Is an S Corporation?

An S Corporation or S Corp is a special tax status a small, closely held company can choose with the IRS. It works like a regular corporation under state law, but for federal taxes, the business itself doesn’t pay income tax. Instead, profit and loss go straight to its owners, and each shareholder reports their share on their personal tax return. This avoids the double-tax hit that regular C Corporations face. To qualify, an S Corp must be a U.S. domestic corporation, have 100 or fewer U.S. citizen or resident shareholders, and offer just one class of stock. This setup gives business owners limited personal liability and a smoother tax flow-through but with more rules and formal paperwork compared to simpler business types.

Key Forms Required to File Your Return in California

First and most important is Form 100S – this is the S Corporation Franchise or Income Tax Return. Every S Corp with income from, or that does business or is registered in California must file this form each year. It calculates your tax liability (usually 1.5% of net income) and confirms whether you owe the $800 minimum franchise tax. Along with Form 100S, you’ll attach several schedules specific to S Corporations:

  • Schedule B (100S): Depreciation and amortization details
  • Schedule C (100S): Any tax credits you can claim
  • Schedule D (100S): Capital gains, losses, and built-in gains
  • Schedule H (100S): Dividend income deduction
  • Schedule K‑1 (100S): Shows each shareholder’s share of income, deductions, and credits.


Also include Schedule QS
california income tax return form if you have a Qualified Sub‑Chapter S Subsidiary. These help the state match up the income or losses passed on to individual shareholders. Finally, check if you need these additional forms:

  • FTB 3539 – Automatic extension payment form (unless you’re paying electronically)
  • Form 100‑ES – Used to figure and pay estimated taxes during the year.
  • FTB 3805Q – If you have net operating losses or built-in gains, this form calculates how much can carry forward.

Follow These Steps to File Your S Corp Return in California

Step 1: Gather All Your Financial Information

Start by gathering all the info or doc you need. These are your income & expense statements, balance sheets, payroll records, and shareholder-related papers. Having everything ready reduces the time it will take to fill out the forms without missing anything. Check twice so you won’t experience mistakes later.

Step 2: File Your Federal Return First

Before you deal with the California state income tax return​, complete your federal return using IRS Form 1120-S. This form shows your business income and how it will be passed on to shareholders. Once you’ve completed the federal return, use the information from it—especially the Schedule K-1s—for your California filing.

Step 3: Fill Out California Form 100S

This is the primary form of S Corporation in California. It’s what you use to report your income, deductions & liability to the state. Depending on your case, you might have to complete other schedules. Pay close attention to the state-specific instructions. Regulations can vary from federal ones, so don’t think they are the same.

Step 4: Calculate the Tax You Owe

They demand S Corporation Income Tax Return in California to pay a 1.5% tax on net income, with at least $800 each yearly. Even if your company didn’t make any profit, the fee is still applicable in most circumstances. If you’re new, then perhaps you might be able to avoid this charge in your first year. Ensure that you get this right so you won’t be surprised by a notification later.

Step 5: Attach All Required Schedules & Form

Depending on your company, you might be required to submit forms such as Schedule B, D, K-1 (for owners) & so on. These assist the state in seeing how your business profits were made and distributed. If you have any subsidiaries or special tax cases, additional forms will be needed, as well.

Step 6: Pay Any Tax Due

If you are paying a debt, you can pay electronically or send a check with the correct voucher form. You can use Form FTB 3539 to make payments with an extension. Make sure that you send payments on time to avoid penalties and interest charges.

Step 7: File on Time

For most of the calendar year, S Corporation Income Tax Return in California is due on March 15. Filing after the deadline leads to penalties, even if no tax is due. If you need extra time, you can get one automatic extension—but keep in mind, this doesn’t delay the payment, only the paperwork.

Step 8: Keep Copies of Everything

After you’ve filed your return & payment, save all documents. Keep the complete return, receipts, confirmations & any supporting forms in case you have to refer again or respond to a future inquiry from the board.

Do You Need Help from a Tax Professional?

If your S Corporation Income Tax Return in California is new and only earns a small amount of income, you may feel confident filing your own taxes. But as soon as things become more complex – such as having several shareholders, fair compensation rules, built-in gains, or passive income – it can get tricky very fast.

California rules and IRS regulations change quickly – one wrong mistake could result in penalties or missed deductions. A tax professional can assist with paying you a reasonable salary, minimizing unnecessary payroll taxes & compliance with all California regulations.

A tax pro – such as a CPA, enrolled agent, or tax attorney provides more than compliance. They can recognize deductions you might miss, plan for expansion, and guide you through an audit or sudden rule change.

Most owners claim that the greatest advantage is peace of mind. Though it costs money to hire assistance, it usually ends up paying for itself with skipped mistakes, smarter planning & more time spent running your business.

california income tax return form

Final Words

It can be challenging to file your S Corporation Income Tax Return in California. But it is not that difficult with the right assistance. You don’t need to do it yourself. Let a tax professional guide you & save you from making expensive mistakes.

At Business Taxes and More, we focus on small business needs. We explain everything in simple terms. We help you file on time and lower your tax burden. Our team stays updated on tax laws and trends. If you would like clear answers & professional assistance, we are here to help you. Call us today, and let’s file your return the correct way.

Frequently Asked Questions (FAQs)

Ques 1. Do all S Corporations have to file a California income tax return?

Ans. Yes. Every S Corporation that does business in California, earns income from California sources, or is registered with the state must file Form 100S each year. This applies even if the business did not make a profit or is no longer active.

Ques 2. What is the minimum tax for an S Corporation in California?

Ans. California requires S Corporations to pay a minimum franchise tax of $800 per year, regardless of income. In addition, profitable S Corporations pay 1.5% of net income. Some new businesses may qualify for a first-year exemption, but most companies must pay the minimum.

Ques 3. When is the S Corporation income tax return due in California?

Ans. For most calendar-year S Corporations, the California Form 100S is due by March 15. You may request an automatic extension, but the extension only applies to filing paperwork—not to paying any tax owed.

Ques 4. What happens if I file my California S Corporation tax return late?

Ans. Filing late can result in penalties, interest, and possible enforcement notices from the Franchise Tax Board. Even if no tax is due, missing the deadline may still trigger fines. Filing on time helps avoid unnecessary costs and stress.

Ques 5. Should I hire a tax professional to file my S Corporation return in California?

Ans. Yes. If your S Corporation has multiple shareholders, payroll, or complex income, a tax professional can help you file accurately, avoid penalties, and claim the right deductions. Business Taxes and More provides expert support to keep your filing stress-free and compliant.

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